BIT 815
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Semester Overview, 2022
Readings and Resources
Computing Hardware: The High-Performance Computing Cluster (HPC) at NC State
Introduction to Linux and the Command-line Interface
Sequencing Instruments
Experimental Design
Data Preprocessing and Quality Control
Error Correction and Alignment
Transcriptome Assembly
Genome Sequencing and Assembly
Re-sequencing, Alignment, Structural Variation
Discovering and Genotyping Genetic Variation
R and R Studio
Transcriptome Analysis: Differential Gene Expression and Annotation
Genome or Chromatin Structural Analysis: Chromatin immunoprecipitation, DNAse hypersensitivity, 3-D conformation
Awk, Sed, and Bash: Command-line file Editing and Processing
CLC Genomics Workbench
HPC and LSF
BIT 815
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