BIT 815
latest
  • Semester Overview, 2022
  • Readings and Resources
  • Computing Hardware: The High-Performance Computing Cluster (HPC) at NC State
  • Introduction to Linux and the Command-line Interface
  • Sequencing Instruments
  • Experimental Design
  • Data Preprocessing and Quality Control
  • Error Correction and Alignment
  • Transcriptome Assembly
  • Genome Sequencing and Assembly
  • Re-sequencing, Alignment, Structural Variation
  • Discovering and Genotyping Genetic Variation
  • R and R Studio
  • Transcriptome Analysis: Differential Gene Expression and Annotation
  • Genome or Chromatin Structural Analysis: Chromatin immunoprecipitation, DNAse hypersensitivity, 3-D conformation
  • Awk, Sed, and Bash: Command-line file Editing and Processing
  • CLC Genomics Workbench
  • HPC and LSF
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